docs: update repo layout for tools/builtin, tools/lsp, data/

AGENTS.md

@@ -12,16 +12,16 @@ ollie/                          ← you are here
 ├── fs/session/   (Go)          9P filesystem tree
 ├── dbus/         (Go)          D-Bus adapter
 ├── cmd/          (Go)          Binaries (olliesrv, ollie-9p, ollie-remote)
+├── tools/        (Go)          Tool implementations:
+│   ├── builtin/                Built-in handlers (shell, reasoning, tool/skill registry)
+│   └── lsp/                    LSP bridge + cmd/ binaries (definition, hover, rename, ...)
 ├── kde/          (C++/Qt6)     KDE integration: plasmoid, GUI, Kate plugin, KRunner, tray
-├── el/           (Elisp)       Emacs frontend (ellie.el)
-├── agents/                     Agent config JSONs (loaded at runtime)
-├── prompts/                    System prompt templates (markdown)
-├── tools/                      Tool scripts (file_read, lsp_*, memory_*, etc.)
+├── contrib/elisp (Elisp)       Emacs frontend (ellie.el)
+├── data/agents/                Agent config JSONs (loaded at runtime)
+├── data/prompts/               System prompt templates (markdown)
+├── data/tools/                 Tool executables + .meta sidecar files (installed to $OLLIE_TOOLS_PATH)
+├── data/skills/                Domain knowledge modules (markdown)
 ├── sandbox/                    Landlock sandbox config YAML
-├── scripts/                    User-facing CLI scripts:
-│   ├── s/                      Session management (sh, bfg, ls, kill, ...)
-│   ├── u/                      Utilities (complete, optimize, cascade)
-│   └── x/                      Internal/plumbing (elevate, prime, bd, task)
 ├── doc/                        Architecture docs, usage guide
 ├── contrib/                    Community scripts
 └── experiments/                Trial notes

README.md

@@ -61,6 +61,8 @@ Single Go module with one Git submodule (kde).
 | `agent/` | Go | Agent loop, history, hooks, prompt resolution, commands |
 | `backend/` | Go | LLM providers (Anthropic, OpenAI, Ollama, Gemini, Copilot, CodeWhisperer) |
 | `toolsrv/` | Go | Tool server, registry, sandboxed execution, remote execution |
+| `tools/builtin/` | Go | Built-in tool handlers (shell, reasoning, tool/skill registry) |
+| `tools/lsp/` | Go | LSP bridge daemon + client library (gopls, clangd, intelephense) |
 | `session/` | Go | Session lifecycle, config, persistence |
 | `fs/session/` | Go | 9P filesystem tree for session namespace |
 | `dbus/` | Go | D-Bus adapter (`org.ollie.SessionManager`) |
@@ -74,7 +76,7 @@ Single Go module with one Git submodule (kde).
 | `kde/` | C++/Qt6 | KDE plasmoid, GUI, Kate plugin, KRunner, tray *(submodule)* |
 | `data/agents/` | JSON | Agent configs |
 | `data/prompts/` | Markdown | System prompt templates |
-| `data/tools/` | Python/Bash/Go | Tool executables + `.meta` sidecar files |
+| `data/tools/` | Mixed | Tool executables (scripts + compiled) + `.meta` sidecar files |
 | `data/skills/` | Markdown | Domain knowledge modules |
 | `doc/` | Markdown | Architecture docs, usage guide |
 

doc/ARCHITECTURE.md

@@ -262,7 +262,7 @@ All other capabilities are **tool scripts** — executable files discovered from
 ### Tool Scripts
 Tool scripts are plain executables with a `.meta` sidecar JSON file declaring description, parameters, tier, and parallelism class:
 - `file_read`, `file_write`, `file_edit`, `file_glob`, `file_grep` — filesystem I/O
-- `lsp_definition`, `lsp_references`, `lsp_rename`, `lsp_symbols`, `lsp_diagnostics`, `lsp_hover`, `lsp_completion` — LSP bridge (Python)
+- `lsp_definition`, `lsp_references`, `lsp_rename`, `lsp_symbols`, `lsp_diagnostics`, `lsp_hover`, `lsp_completion` — LSP bridge (Go, `tools/lsp/`)
 - `memory_remember`, `memory_recall` — persistent memory
 - `reasoning_think` — scratchpad for externalized reasoning
 - `subagent_spawn`, `subagent_generate` — sub-agent lifecycle